PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna19887.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 901aa    MW: 98792.8 Da    PI: 6.2596
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna19887.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.38.3e-11144168226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                              +++ C ++++t tCk+G+ CkF H+
  mrna19887.1-v1.0-hybrid 144 GEKDCAHYMQTRTCKFGEACKFDHP 168
                              7889********************8 PP

2zf-CCCH32.51.5e-10197221327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               + C++f++t  Ck+G rCkF+H++
  mrna19887.1-v1.0-hybrid 197 APDCPYFLKTQRCKFGLRCKFNHPK 221
                              589********************96 PP

3zf-CCCH38.61.8e-12244268327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                              +++C f+++tG+CkyG++CkF+H++
  mrna19887.1-v1.0-hybrid 244 EPPCAFYLKTGQCKYGATCKFNHPK 268
                              79*********************96 PP

4zf-CCCH37.15.3e-12318343126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              ++++ C+f+++tG CkyG++C+++H+
  mrna19887.1-v1.0-hybrid 318 PGEADCPFYLKTGSCKYGATCRYNHP 343
                              57899********************9 PP

5zf-CCCH38.71.7e-12399423226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                              ++ +C ++++tG CkyG++C+F+H+
  mrna19887.1-v1.0-hybrid 399 GQTECEYYMKTGVCKYGAQCRFHHP 423
                              6789********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0062142169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.197142170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-5143169IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8144168IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5194221IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.605194222IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-8197221IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-5199224IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4200222IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6241268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.023241269IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-10244268IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5245269IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5246267IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-7317344IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.432317345IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9319343IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-5321344IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4323342IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-6395425IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6397424IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.765397425IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-10399423IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5403423IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 901 aa     Download sequence    Send to blast
MASHLFTYGG AAAQSAPPPA PPLSTVYTPR SLAQSYLSDP VAQRYLSGSD PLSTSSMYFS  60
ASDGLGAYSD AARATSYMMS SWPAPDAEPA PPGFKRSSEA LYHQALLGAH DPIGQMEAWY  120
STNPLAKRPR FENTSLPIYP QRPGEKDCAH YMQTRTCKFG EACKFDHPIW VPEGGIPDWK  180
EVPLAAPSES LPERPGAPDC PYFLKTQRCK FGLRCKFNHP KDKLATAGAS ENGDVNALPE  240
RPSEPPCAFY LKTGQCKYGA TCKFNHPKDI QIPSTTQENK SAETETALKT ESSEVAVKPL  300
VSFTPALLYN SKELPVRPGE ADCPFYLKTG SCKYGATCRY NHPDRYDINP PVAAISYPLP  360
APSVAGFNLG VANPSAFTYQ TLGQTTMGVN PTVYPQRFGQ TECEYYMKTG VCKYGAQCRF  420
HHPIDRPAVP LSTTKPSQQE NVKLTLAGLP RREQWQHHKQ NLILLEGKHK QLNPHHSSSR  480
LQNEEEMRPR KETSAATPAH NAATEILEFY FSSHTMSLDP SHSSIRPYNS PTSPVAPQVS  540
STTSPSSPSA PRTIPQCLYN LTALAFGNDT DPGVTRSFIS DFLEATTLTL KGQELVYNKT  600
LPLVNTIDFS SNHLDGEIPK GNQLQTLNDS SIYESNPSLC GVPLSTLCLG DAAPAPADPN  660
DDDGHNDDDN EDNGKLGFWS VCGTLVMKKS WRYAYFRFFD NIQERVESAI AVRGYIVSFS  720
FGSGAFHVTA LWCWGFVEEY GRYCSWMLHL NFGRTTEAEL VLGSEKCMQT RVEEIDKLLQ  780
SAVATMKPPP PRRRFSVILD CISDDDAAST SRASSTEAEI FCALVDLSDL SPDLVVDLHG  840
GKSTVDGEDV ILGFQFSVFR SGLPEAKDNC SRTNTTPAET GEDVGGYRGR GCYRGRYGFL  900
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004295542.10.0PREDICTED: zinc finger CCCH domain-containing protein 37
TrEMBLM5X1V90.0M5X1V9_PRUPE; Uncharacterized protein
STRINGPOPTR_0008s07980.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-161floral homeotic protein (HUA1)